Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr16_0038000

Sequence Length

297 nt

GC Content

0.4343

GAGAAUUGCUUGAGCCCAGGAGGCGGAGGUUGCAGGGAGCCGAGAUGGCACCACUGCACUUCAGCCUGGGCGAGAAAGUGAGACCCUGUCUCAAAAAUAAUAAAACAAUAGUAAAAAUAAUAACGUAUAAACAUGAAAGUAAUAGGCACAAGUCUUAAGUUUGGAAAAACCAGCAUUAACAAUCUUCACAAGAAGCUACAAGAUAGAGACUAUCACCCCUUUUGACAAAUGAGGAAACUGAGGCUGAAGAGGAAAAGAUAUUUACCCACAGUCCCACAGGGGUUGAGGGACAGGUAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-70.80 kcal/mol

Ensemble Metrics

Free Energy: -77.19

Frequency: 0.0000

Diversity: 57.88

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((((((.(((((((.....(((((.((((((.(((.....))).)).)))))))))..))))))).......((((((...))))))..................................................((((....))))(((..((((.....))))..))).....((((....))))......(((((...)))))...((((((.(....(.((....)).)...).))))))............(((.(((((((...))))))).))).)))))))

Thermodynamic Ensemble Prediction

.....(((((((.((((({{.,,{.((((,{((((((.(((,...,))).)).))))))))).}))))))).......{(((((...)))))}.................,,............,,....,,......,,...((((....)))),,,{{((((.....)))),.,,,.....((((....))))......(((((...)))))...((((((.,....{.((....)).}.,.}.))))))........,,,.(((.((({(((...})))))).))).)))))))