Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr17_0443500

Sequence Length

506 nt

GC Content

0.5494

GUUGGGGAAUAAGUAGGAGAUGUUGGGGAGUAUUUUGGGGUGGUGGGUGAAUAGGUGGGACUGGUAGGCGAGUACUUGGGAGAGGUGGGUGAAUAUUUGGGACUGGUAGGUGAGUACUUGGGAGAGGUUGGGGUAUACUCUGGGGAGCUGGGACUGUAAGAAGGACUGGUUGGGGUGUACUUGUGGGUGAGGUUGGGCUGUAGCUGGGCGAGCUGGGGCUGUAGCUGGGUGAGCUUGGGGUAUAGGUUGGAGACUGUGGUGUGUAUCGUGGGCUGGAAGGGGAGUAACUUGGUGAGGUCGGGGAAUAGCUGGGUGAUGUUGGAGAGUAGCUUGGAGAGGUUGGGCUGUAGUUAGGGCUGGUAGGUGUGUAGUUGGGACUAGUAGGUGAAUAGCUGGGUGAUGUCGGGCUGUAGCUGGGUGAUGUUGGGGUGUAAUUGGGACUGGUUGGAGAAUAGUUCGGGCUGGUGGGUGAGUAACUUGGGGAAGUGGGUGAGUAGCUGGGGGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-113.60 kcal/mol

Ensemble Metrics

Free Energy: -124.39

Frequency: 0.0000

Diversity: 147.81

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.......(((...(((((((.(..(.(.((((.(((((.(.(.(...(((......)))...).).).))))).)))).).)...).)))))))...)))((((......))))............(((((((((((....((((((..((......))..))))))))))))))))).............((((.(((((.....))))).))))..((((.....)))).(.(.(((((........))))).).)...((.(.((((....(((......))).....)))).).))((((((.((...(.((.(((.....))).)).)..)).))))))(((((.((((.(.(.((.(.((((((..(((....)))...)))))).)..)).)).)))).)))))......(.((.((((.........(((((((.(((.....))).))))))).........)))).)).)..........))))(......)

Thermodynamic Ensemble Prediction

{((,.....,.(((...(((((((.(..,.{.((((.(((((.(.(.(...(((......)))...).).).))))).)))).,.,...).)))))))...))}.,{,..,...,||||......,.,..{((((((((((....((((((..((......))..))))))))))))))))}.....{..{{((,{(((.(((((.{.{.|||||.||||.,}|||.,.|.||||{(.(,(((({........))})).).),,,|{.{|(|((.,..{{{......)))..,.,)})),},},{(((((.({...{.((.(((.....))).)).)..}).)))))|(((((.((((.(.,,,,.{.(((({{..{{|....)))...)))))).},.,).}).)))).))))).,.,.,,.||,,}}}.},}},...{({{{{{.{{,.....))).))))}}}.,.,.,.,.||||..,.,},}.,.}.,.)}))|.,....}