Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr18_0229600

Sequence Length

224 nt

GC Content

0.3259

AUAUCAGAGACAAUAAUUUUCUUUUUGGAAAACUAUGUAUUUAGGUCUGCACUCAAUUUCUAAAAUAACUGUCUAAUUGUUAAGUCCCAUUCAAAUGAGCUUCAUGGGGUCUUUGAGAUGUUUCCAGUUAUGAAGUUUGUAGCAUGUCUAAUACAGGCAAUCCUGUUCUAUUGUGCUUUGCUUUAUUGUGCUUUGUACAUAUUGGCGUUUUUUACAAAUUGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-38.00 kcal/mol

Ensemble Metrics

Free Energy: -43.79

Frequency: 0.0001

Diversity: 80.85

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.............))((((..((((..(((..((((..(((((..(((((..((((((....(((((((....(((...(((((((((.............)))))).)))...))).....))))))))))))).)).)))..))))).(((((....))))).....(((((...((........))...))))).....)))).)))..))))..))))

Thermodynamic Ensemble Prediction

(({{{{{{{(({{({,{(((({....})))}}.,,|{{,,{{{{{,,({{{,..((((({....(((((((....{{(.,,(((((((((,,....|}.....)))))).))).,,})}.....))))))))))))}.}},|||,|}}}}},||(((,...}}}}}.....|}}}},.,|||,}},|||||,,,)}}}),},{,,||,|||}...))).})}})