Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr19_0396300

Sequence Length

394 nt

GC Content

0.5228

GUCAGUAGAACUGGGGAGGCUUGAGUCUUGGCCUGGUCAUUUCCAAGGUUCCAAGUUUACUACAAUAGGGGGUUGAUAGGGGUGCUCAGGGGUUGGCCACGAUGGUGUCCUUGAUCCACUUCCGGUAAUGCACCACCUUGGUGUACAGGGAAGGCCUUUCGGGCAGGGCACAUGGUUCACUGCCCCAUGACGUGAUACCUUGAAGCACACCAUUACAGACAAGUGGGCCCCCAGAAUCACCCUAAGGGUAAAAGCAGGGAGAGAGUGAGAUAGGUCAGUCCCAGUUUCUGCCUGGGCAAUCCUAUCUUUCAGACCUGGACAGGCAGAUAACAGAUAGCAGUUCCCAGCUUUGGAAGAAGAGAGAAAUGUCUCCAGAGCCGACUUCCAGAAGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-124.50 kcal/mol

Ensemble Metrics

Free Energy: -133.46

Frequency: 0.0000

Diversity: 158.14

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.((((((.((..((((.((((.(...((((...))))...))))).)))).))))))))))....((((((((...((((((.((.((((..(.((((((((((((.(((......(((((.....(((((((...)))))))...)))))(((((......))))).((.(((((((...........)))).))).))))).))))))))........)))).))))).))..)))))).(((((.....((((.(((((.((.(((......))).)).))))).))))....))))).(((((((((.((((((..((............)).))..)))).))))))))).((((......))))......))))))))........

Thermodynamic Ensemble Prediction

(((.{{,{,{(({(((({(((({.({{{{{(((((|,,,..,||}}||||||.,|||{|||,,..{{(((((((.,,.((((,((((((((({{,,..{{,((((((({((,......(((((.....(((((({...}))))))...)))))((({...}}}}}|||}}},,,}}.,.},))))},|,..|||,..},,},,,)})),|}|||........,)))))))))..}))),))))}.,})}}.,,}|.{|}|,,{{.{{{(({{||...|}|||||}}}}},}))|||,..,}|||||||{|.||}||||}}}}}),},,..,},,,}))..)}))))|((((((|,||.,{.,....,.)))))))))).)))((,.....),))