Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr1_0345800

Sequence Length

266 nt

GC Content

0.3910

AAUAACCCCAAAGUUUCUCAUCUGGAAAAUGGAGUGGCUAUUGAUGCUAUUUAUACAGGUCAAGAAUGAUGGGAGUUAGAGCAGGCAUCAGGGUGGGAACAGGUCUCAUGUUCAAUUUUGAACAAGUUAAUUUGAGAUACUUGAAGGAAAUUCAUGAACAAAUAUCCAAGAGGUAGUUGAAAAUGGAGCCCUGAAACCCAGAAAAGAGAUUAGGACUGGAGAUAAAAAUUUGGCAACAUAAUCAUAGAGAUCUGGGAGAUGGGGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-52.80 kcal/mol

Ensemble Metrics

Free Energy: -58.40

Frequency: 0.0001

Diversity: 68.05

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((((.....((((((((((......(((((((.......))))))).......))).....)))))))(((......))).(((((((.....(((((((((((((((....))))))........)))))..)))).......(((((...(((.((((.....)))).)))...))))))))))))..((((((.....((((((..(((((........)))))...).))))).......))))))...)))))..

Thermodynamic Ensemble Prediction

.....(((((...,{((((((((,{....,,(((((((.......)))))))...,..,}|,....,)))}}},||}......,,},||{{{{{||||.{,,({((({((((((....))))))........))))},,}}|}.,,{...(((((...(({.{{{({....)))).)))...)))))}})))}}..((((((.....(((((...{((((........)))))...}.))))).,.....))))))...)))))..