Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr1_0552600

Sequence Length

470 nt

GC Content

0.4298

CAGAUUAUACUCCUUCACUGAGCCUUCAGACCUUGAAGUAGAAGACACAGGGGAAGCCCUCCAUCCCCAGAUAUUCCGAGUCUAACUAGAGUACAGCCACCACAACACCUGGCCAGGUUGAAACAGAGGAUUCCUAUUCCGAAGAACUUAAUGGGGAAUAUAUACCUGUUGGCAUGUGGUGAUGGGAUGUCACAAAGGCAUACUUUUUCUGGUUGAUUUGAUGUCACUCCAUCUUUUUAGCUCACGGGGGACAAAAGCAGCAAUGAAGAAAGGCAUAUGGAACUCUCACAGCAGUCAAUUCUAAGAAAAAAAACUGCAAUUAAAUUUUCCUUUCUCCUAACAUCUAGUUUUUCUUGACAACCUUUUUUCCUUUUUUUUUUUUUUUUUUGGAGGCAGGGUCUCUCCGUAGCCCAGCCUGGACUACAGUGGCAAGAUCACGGCUCACUGCAGUCUCGAAUUCUUAGAAUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-101.10 kcal/mol

Ensemble Metrics

Free Energy: -111.20

Frequency: 0.0000

Diversity: 131.35

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((...((.(((((((((....))))....))))).))........(((((.........)))))...(((((..(((...))).)))))(((((.(((.......)))...))))).....((((((((.((((((..............))))))....(((((.(((.((....((((((.((.((((((..((..(.......)..)).)))).)).)).))))))....))))).)))))(((.(((((...(((.(((((((((.....((((........(((((.................))))).........)))).....))).........))))))))).....))))).)))....................((((.((((.........)))).))))(((((.(((((((.........)).))))).))))).))))))))..))))..

Thermodynamic Ensemble Prediction

..((({....((((((..((((((((((|....))))).,{{{{,....(((((.,.....,.))))).(((((,.{(((((.((((((({..,,,,(((((({...{({,{,{(|{{.,..,,,,.{,,{{{{(((({{.........,,},})))}},...,)))))}}}..))))))).,|{|{((((.....))))}.}}..,)))))))))))))}))))......,},,,...))))).)))))}{(((((.,,.,,.(((((((((.....((({........(((((...,{,...,,,.....))))).........}}}}................|||.,,,,,)},..,}}}},,})})}}}},,.,....,,}}}).((((.((({,,......,)))).))))(((((.(((((((.........)).))))).)))))...........))))..