Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr1_0715500

Sequence Length

567 nt

GC Content

0.3333

AGAAAAAUCAGUCAUUAGAAACAUACCUAAAAAUCAGAGAUGAUGGAAUUAAUAGAUACUGACUUCAAAAUAGUACAUGAACAUAAAGAAGAGAUAAAGGGAAAUAGAAACAAAUGAGACUGUAGAGAUAAAACAAACAACAUCUAAAAUAAAAAAUUCACUAGAUGGAAUUAACAGAUUCGACACUGAAAGAGAAAGGACUUCUGAAUGUGAAAUCAUAGCUAAAGAAUCGAUAUAAAUUACAACUGGGAAAAAAAAGCCUCAGUGACCUGUUGGACAGUAUCAAUGAAUCUAACACAUGUGUAAUAUAAAUUACUGAAAGGAGAAAGACAUUUGAAAAAGAAUGGCUGAAAUUUUCUAAAAUUGGAUAAAUAACUAAAUGCACAGAUCUACAGUUGCCCAGGAGAAAAGGGAAAUGAAUAAGGUGAUAGUUAUGAUUACUCCAGCUGGAUACCUAGAAACAAUGUCCAGGCUGUAACACAGGGAGAGGAAAACAAAACAAAACAAAAAGAGCCUACGAGGAUCCUUGAUUUAAUGAUACUGAGUUCAGAGACUGGGGAGACCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-79.50 kcal/mol

Ensemble Metrics

Free Energy: -91.17

Frequency: 0.0000

Diversity: 133.40

Structure Visualization

Structure Prediction

MFE Structure Prediction

(......)(.(((.((((........))))..((((....)))).....((((..(((.(((.(((....((((..((((((((..(((((..................(((........))).................((((((...............))))))(((((....)))))...................)))))..))))....)))).))))..)))))).)))..)))).................(((((((...(((.....((((((((.((((((..........(((((....))))).(((((.....((.(((((......))))).))....))))).....(((((((((((((((....(((.........(((.(((.........))).))).......))).)))))))..))).)))))(((((((...........))))))).((((...))))...........................((.(((...))).))...)))))).))))))))....)))..))))))).)))...)

Thermodynamic Ensemble Prediction

.......|(((((.((((........}}},..((((....)))).....{,,,..{{{,|{|.{{{....((((..{({{{({{..{{{{{...................,........}|}|.................((((((..........,,...))))))(((((....)))))....{{.....,,......}))))..}})),...}))).}}}}..}}}}},.,,,..,,,...{(((((.........,}|}}}|...{{,,,||,((((((((.((((((..,,....,,(((((....))))).{,{{(,,,..((.(((((......))))).))....))))),....,(((({,,(((((({....(((.......,,{{,.(((.........))).,}),......))).)))))))..}},.))|}|(((((((...........))))))).((({...}))),.,,,{,....................,..{({...})).))})})))))).)))))))).,}}))}.}))))||,...)}..,