Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr1_0853400

Sequence Length

235 nt

GC Content

0.4170

AAAGAUUACAAUUAUGUAAAAGUAAAUAUGGACCAGAAAGGAACGCAGACAAGUCCCAACGUCUGUUAAAUUCAAAUGGGACUUCAUUGCUGUUGGACCACAAAUAAAAAUCACGAAAGGAAAAUAAAAAUGUCAGAAGCUUAGAGCCAGCCCUACAGUCACAAUCACAAGCCUGCAAACAAGUGCCUACCAAGUGGGGGACAAGUUACAUAGCUACCAGGCGCCAGAACAGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-29.30 kcal/mol

Ensemble Metrics

Free Energy: -36.71

Frequency: 0.0000

Diversity: 63.68

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((((....)))))..........(..((.....))..)......((((((((..................))))))))...(((((((((..............((.(....)))..........(((...((((...(((...((((((((.(((....................))).)).....)))))).....)))....))))....))).)))..)))))).

Thermodynamic Ensemble Prediction

.....(((((....))))).........,(..((,....}}..}{{{{,,,(((((({..,,.,|,......,...))))))))..|{((((((((.,,...........,,.,....}},.........,{{,.,..(((,.,,,,..,|,|||,,|,...........{{{({,......|{|{{{.{...}})))},.,.,|||....})))..}}))),)},..})))))}