Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr1_0853900

Sequence Length

401 nt

GC Content

0.4140

UAGGCCUGACGUCAAAUGAAAGCCUGCAUUUGAGGGGCAAAAUUCUAUGUUCUGAUCCAACAUAGCCUACCCACAUAGUCCCAGUACAUUACGAACCAUUCAAAAAACAAGUGAGAGAAGAGCCUCUCCUGUUUCCAAAGGCCACAGAAAAAUGACAAGUGCUUCAAGAAGCCCAGAAACACCAACCACCUGGAAAUCUAAAAAGGAUAUACCACAGCUGACACAGAAGGGAAGUAGAGUUGGAAUAGUCCUGUUUUGUGACCGCAUGAAGUUUACAAUCUAGUGGUGGAGAACAACAUGUAAAUAAUUAACAAUAACACCAAGCAAAUAACACACCAGACACAAGCUGCACAAAAUGACACUAUAGCACAAGCAUAGAGUUGAUUAAUCCUCACAGAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-70.10 kcal/mol

Ensemble Metrics

Free Energy: -79.38

Frequency: 0.0000

Diversity: 65.03

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((....(((...)))...)))))(.((((((((....(((((((((((.((.((((((.....((.(((.....((..((((........................((.(((((......)))))))(((((...((((.((.............))))))...)))))((((.............))))..((((.....))))........))))..))....))).))....))))))(((((..(((((((((...(((((..((((...(((....)))...))))..))))).....................(((....................))).)))))))))..)))))....)))))))))))))......))))))...)).)

Thermodynamic Ensemble Prediction

(((((.{..{{{...}})..,)))))(.((((((((....(((((((((((.{{.((((((.{.{,{(.(((.....((..((((.......{,.....},........{(.(((((......)))))))(({{(...,((,.{{.............}}}}}}...}})))((((.............))))..{(({.....)))}........))))..))....))).})}.,.))))))(((((..,((((((((...(((((..((((...{((....}}),..})))..))))).....................,,,...........,{|.,....))))))))))))}..)))))....,,)))))))))))......)))))}..}),.)