Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr1_0855500

Sequence Length

548 nt

GC Content

0.4544

GUUUCUGGCUAUGCCCUCCUCCAAAGAGAGGUUUUCACCCGUCUCAGGGGCAAUGAGGCCAGACAUGAUAACCUGAGAUUCCAGAAGCACUAGGCCUGUGUCUUGGUCAAGGAGGCCCUUUUGCAUGGCUUUGAAGAUGGGAAAUAUCUCCACUGUGCCUAGGUCAAUCACCCCAGCAACUGCUCUGCAUUCCUUUUGUUCUGUCUGGUGAGCCAACUGGCUCUGAAGCUGCUGAAGCUGAUUUGCAGAACCAUCACAAAGGUCAUGGUAAGCCUUGUUUAGGGCAUUCAAUUGCUCAGAUAUUUGUUUCUUCUCUUUUUCUGAGAGCUUAUGACCAUGCUUGGCCAAGAAGAUCUGUGAUGUUUUAAUAGCUUCAGAGACUUGUUCUUUCUUUGUUGUCAGCUCUUCUGACAGAACCUGCUGUUCCAAAAUAGCUUUUUCAAUGUCUGUUGAUUCUUUGGUCUCGGAUGAGGUAGCUUUUCCUUGUGUAUUCCUCGCUAGGGUAGACACCCAGCCCAAAAGUUCUUUAACCUUCUCCACAUGUUCUU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-145.60 kcal/mol

Ensemble Metrics

Free Energy: -157.48

Frequency: 0.0000

Diversity: 210.88

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((((......((((((....)).)))).........(((((((((((......)))...........)))))))).))))))))(((.((((........)))).))((((((..((.(((.(((.(((((((..(((......)))....(((...(((.....)))...)))..(((...)))........((((((((.((.((((((((...(((((((((((.((((((....((((((((((((.((....)).)))))((((..(((((.(((((......))))))))))...)))).(((((.......)))))(((.((.(((....))).))..))).))))))).)))))).)))))))))))...............))))...)))).)).))))))))..((((((....)))))).))))))).)))))).))......))))))(((.((((((((((((.((.((((...(((.....)))...))))..))...))))))).....))))).))).........)

Thermodynamic Ensemble Prediction

((.(((((((.((((((,,,.....{{||||,....,,}..}}}|,)))))}....})))))).}}{{.,{{||((((|,,|{({||{(,,,((({.,,,,,,{||{|{{|((((({,,..,{({.((({{{{.{({(((({....}}}}),,.,{{{...(({.....}})...|}}...||,,{|||........(((({(((.{{.(((((,{{.|||||{{{(((({.{{{||{....,||||||{{(((,{(...,)},})}}}||||}.|||,,.{((({......}))}}|||,,...,..,.,,{((.......))))}|,,.||,|||.,}})))})),}|||.|||}|||.|||}}}.})))})))})),}}.,,,........,,||,{{|}}}.,),)))))}}}..((((((....))))))...,||||.}}}}),})},},}..))))))||{.(((({{(({{{{.{{.{{{{...|||,,,,.|||,..}})),,)),..})))))}.....)))}}.}})....}}}.,)