Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr1_0858100

Sequence Length

313 nt

GC Content

0.3866

AUAAGCAUGCCUCCUAAGAAAAAUCUAUCUCAAACCAACUCUGGUUUUAGUUAAAGAAAGGCUUAUCAAUUUCAAGUGUCCUAUAGAAAAAACAUGGUGGGAUUCCUUAACAACAUCACUUCCCAUCACUCUCUCACUUCUAGGUUCCACCCCAAAUGAAACUGGCAUAAUAAACUGCACUAAUUAAAUUUAUUCCACUAAAGUUAAGGGAAAUUCCCUUACAGGUAAUGACCUCAAUUUUCAGCAUUAUAAGAACACCCUAGUCCCAAUGGGGAUGGGUACCUUACCUCUGUAAUCUGUAAUGGUGGGCGCG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-56.80 kcal/mol

Ensemble Metrics

Free Energy: -64.28

Frequency: 0.0000

Diversity: 77.32

Structure Visualization

Structure Prediction

MFE Structure Prediction

....((..(((...((((.....(((..((.((((((....)))))).))....)))....)))).((.(((((.(((.((((.((........((((((((..................))))))))........))..))))...)))......))))).))(((........)))..........................(((((((...))))))).((((....)))).......((.(((((((.((..((((..(((((....)))))))))...((((....))))))))))))).))))))).

Thermodynamic Ensemble Prediction

((((((..,,{{....{{,....|||..((.((((((....)))))).))....,},...))))))(........(((,(({{,(({.......((((((((..................)))))))).........}..}}||,.,|||,,,{..||,.,.|{({{........}}}...........,|,...,..,...{,{((((((...))))))),((((....)))).......{{,,{{{{{,,{,..{(((..{((((....))))))))}..,|{{,...,))}}))))}),}),})))))))