Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr1_0934200

Sequence Length

366 nt

GC Content

0.3224

AAGAAAUGAAUUGGAUAUUUUGGAAUUUAUUUAUAGGCUAGGCAAUAAGUUACUCAGAUUAACACAGAUCAAUACCACCUUGACUUGUUGACCCAGAGAAUUCUAAUUAGAUUUUAGGUGCAUUUUUCUUUAUCUUGGUAUUUAAUACAUCAUCUAAGUCAGUAACCGUGUUAAACAAAAUUAAAAUGACAAGUUACAGCUUACUUCACAGUCUAUUUCAAAUUCAGCUUGUCCACUAGGUCAGUUUUACAGGAGAUGGUCUUUUAACAUGAAGAGGUCUGAUAAUCUGGCAGGUCUCUUCUCUCCCAAUUAAAAAAACAAGAGUUUUUUUGCUAGCUUGACAAUUUUAUAGGUGAAAAACAUGAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-59.20 kcal/mol

Ensemble Metrics

Free Energy: -65.85

Frequency: 0.0000

Diversity: 107.78

Structure Visualization

Structure Prediction

MFE Structure Prediction

......(((.((((((...(((((((((.........((.((((((((((((....((((......))))..........)))))))))).)).)).)))))))))...(((.((((((((................))))))))...))))))))).))).....((((((...((....((((((..((((((..(((.........((.(((((((......((((.(.((....)).)))))......))))))).))........(((((((((((.........)))))))))))..........((((((((....)))))))))))))))))...))))))....))...))))))..

Thermodynamic Ensemble Prediction

,,,{{{(({,{({{({...{{{((((({|,||..,,,((.((((((((((((....({((......}}}}..........)))))))))).)).}},},,}}}}}}.|||||}||||||,|,...,,,,,,.,,.,|||||,,,},.,.,,}}}||}||},,,,,,{{((((,..,,....{{{{{||,||{||||,,||,........((.(((((((......(((,{(.((....)).)))))......))))))).))........(((((((((((.........))))))))))).........,((((((((....)))))))))}))))))).,.,)}}}},.,,}}...,})))),,