Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr21_0025600

Sequence Length

554 nt

GC Content

0.3736

UCAUGGAAAAAAAAUCUCUCUAAAGCAUCUGAAAUACUUAAAAAUGUUUAACUUUAAAAUGCAUAGUGAUCAGGAAAGGAAUACUUAGGCAAGAGAAGCAGCUGAACUCCCACGUUCACAUGAAGCAUCCCCCAUCGAUUCUUAAAGCAUAUGUAAAGUAGGACUUAAUUGGGUCACAAACCACAAGAAUAAUAUACAACUGGCUAAGGGGCUAUGUGAUAAAUAAUCAGGAGAGAAUCUAUUCAUGCACUAGUUUGAUACAGCUAAAUUCUUUACAGUACACAAAACCCAUUAAUAAUGUAGUAUAGAGACCAAAAUGUAAAGAGAGAUAGAAUACAUUACUGAUGUGUGGAUUAAUUCAAGUUCAGGCAUCUACUUGUGUUACAGCACAGCUGUCAAAAGGCGAUAAUGAGUAAAUCAUAAAACGGGUUUGUUUCUUCCCACAUUAUUCUAUAAAUGGACACCGAUGGGUAGUGAAGCAAUGGUUUUGCUGUCCAACUUCAGAGGCUGCUGUGGCGGGGGUCUAGUUCUGCAUCUGCUCAAAGAACUUGUAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-105.60 kcal/mol

Ensemble Metrics

Free Energy: -118.30

Frequency: 0.0000

Diversity: 198.70

Structure Visualization

Structure Prediction

MFE Structure Prediction

...((((.......((((((((.((((((((((...........(((((..((((....(((..((((.((.......)).))))...))))))))))))..(((((......)))))...((((((..(((....(((((((..............(((........((((((.....))).)))........)))...(((((....)))))(.((((.....)))).).)))))))(((((((......((((...((((((....(((((((((((((((..............))).))))...........)))))))).......((((((.....(((((.((((((......)))))).)))))....)))))).......))))))....))))....)))))))...........)))..))))))......((((........))))........(((((((((((((....)))))))))))))..))))))...)))).))).)))))))))...((((((((......)))...)))))

Thermodynamic Ensemble Prediction

,,,((((.......(((((((..{(({({({{.....,.....,,||||.{{{{{{..,(((.{{{|(,((.{{...({|.,.|||..||..|,|..,{{..(((((......)))))..}}..|,.}}},|}.,.|}}||||...}}},.,,}}}}}}.||||,,..,{(({|,.,..,}|.,.,,.......,,{,..(((((....))))),}|{{{.....}}}.|||}}}}.,,|,||||||{,{{,{(({,..,{{{{|....(((((({(,((((,...............}))}}),),,,,,......)))}}})}},,.,.,,,{{||.....(((((.((((((......)))))).)))))..,,||||||{{{{{,,|||||||,.,,}}},...{|{{,,...))}}....,{|||||||||,..}}},.,,},,|||...,,})}}}.}}}.|{||{((((((((....))))))))))))}.,}},}}},}}))))})))})}))))}}},|||||{,|{|,}....})),,,,))))