Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr21_0087800

Sequence Length

782 nt

GC Content

0.4437

GUCCCUGUGUCUCUUUUUGCUUCAAAGGCCAAAACUAUCCACUUUCUUUUAUUUUGACUAACUGGAAAUCAGCCAACAAAAAUGCAGUGAAGUCAGUGAUAAGUCUGACCUAGCAUGAGUAAGAUAAAGCUGAAGGUGAAACAGAAAAAAGAAAACAGCUUGAGCAAAGGUAGGAGGCCAGAGUAGUAUAUUCAAGGAAGGCUUCAGAAAGAUAUUUAUAGUGAGCCUAAGUGGCUCACAGGACAUCCUCCGCACACACAUAUACACCAAGAACAGAGUGCCUAAAGGGCUUUGCCUAUUAUUAAUGCUAUUCAAUUUCUGAUUGAUAACCUUAAAUAAUAGAGUUUCCACACCUAUUGAUGGUACCAACAUGCACUAAAUUCCUUACCUGAAUCAUCCUUGAUGACUGUCUUUCUCUCACCCCCACAUCUAAUCUAUCAGCCAACAUACCAAAGCUUCCCCAAACAUCUCUCACAUCUGUCCUUUUUUUCUCUGUCCCCAUGUCUGCCACUCAAGUCAGUCUCCACCAGCCUCCUACUAGUCAUCUAAUGGUAUGUUUGCUCUCCCCCGCACUUUUCUCCACACAGCAACAGCAGUCACAUCAAUCCCCAGCCCAGAAUUCAACAGUUUGCCAUUAUCCCUGCAUAAAAAUCCAAAGCUAUUGCCUUAACCAGGAAGGCCCUUCAUAUGCAGGCUGGCCCUGCCCCAUCCCUUCCCUGGCCACCUCCCAUCCUGACUCCCUAUCCAAGCUCACUCCACUUAGGGGUCUUCCACCAACCACA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-144.30 kcal/mol

Ensemble Metrics

Free Energy: -158.83

Frequency: 0.0000

Diversity: 198.85

Structure Visualization

Structure Prediction

MFE Structure Prediction

(...)((((......(((((((...((((.............((((((((.(((((....(((.....(((((...........((((...(((((........)))))...)).))...........))))).)))....)))))))))))))...)))))))))))((.(((.((((((.(.((.....(((((((.((.(((((.(((..(((((..(((((((.....))))))).(((.....)))......................((((((.(.....).)))))).((((((((........((((((...))))))........)))))))).........(((.......)))............)))))..)))..))))))).)))))))(((((((.............................(((.(((((((((........................................(((.......(.(((.(......).))).).....)))........(((....))).))))))))).))).......((...............))....))))))).........................(((...((((.....((((((((................(((((.......)))))......)))))))).)))).)))........)).).)))))).))).)).....(((.(((((.................))))))))..........))))

Thermodynamic Ensemble Prediction

(...)((((.....{(({(((,...||||.},,,.....{{{{{{{,{{{{{((({,{{..{(({....}}},........{((({(.,..(((((........)))))}}.}}}},|}}}}}}}}},|{{}}}||}|..,{{{{,{{{{{{..{{{(,,{({{,...(({,(({(({,(({{{(({....(((((((.((.(((((.(((..(((((..(((((((.....))))))),(({...,,)}},,,...................{{((((,(,....)|))}}}),((((((((,,.,....((((((...)))))).....,,.)))))))).||.....,{{{...,,.,))}.......,,,..)))))..)))..))))))).))))))),||||||}}.,}}},.,,,.................(((..,,,,,,,...}}}.............}}}}...}}))..}}}}}}}.}}}}}.....,(.(({.,.....,).))}.}..,..}}},.......|||,,,.}||,|||||||||{||}.......||...............||....)),}},,.................,.......||{..,||||,,...{{{{{{{{..........{{....||{{{....,{{||||}..,...}}}|}|||.}|||,})),.......,,.,.}))))}.,,,.,......(((.(((((....,,....,,.....))))))))..........))))