Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr2_0617500

Sequence Length

402 nt

GC Content

0.4826

GUUCUGUGGAAACACUGCCCAUACCAGGAGCACCUACAACUGGUGUUUCAACUGGCCGGAGAGUAGGACUAGGAUUGGGAACAGGAGGUGGAAGUAUGAGAAGAGGAGAGGCUGUAUCUGAAGGAAUCUGCGACAGGGGCUGCUGGACAUCAGCAACCAUUUCAUCCCCUCUGCUGGGCACUUUGGCUGGUAGACUAUUUUCCAUCCGAGUCUCCUCUUCAGCUUUUUCCGUUUGCUCAGUUUUUGGUUCAUCUUUCCUCUCAAACUGUGAUGCUUCCUGAGACUGAUGGUCUGAAGGAGUACCUGGUCUAGCAGAUGAUGAUGAGGUCUGGGGAGUUUCCUCACUAGCUUCAACUCCUACUCUAUCUGUUUUCUCUCCUUCUUUCUUAUUUGUCUUAUCGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-120.20 kcal/mol

Ensemble Metrics

Free Energy: -129.14

Frequency: 0.0000

Diversity: 146.22

Structure Visualization

Structure Prediction

MFE Structure Prediction

((...(((....))).))((...(((((((((((.......)))))))...))))..(((((((((((..((((..(((((((((((((((...........(((..(((((((....(((.((((.((.(..(((.((.(((((.....))))).))((((((((..(((((((((((...((((.(((.(((....)))))).))))(((((((..((((......(((.....((((((((.((..((((................))))...)).))))))))))).))))))))).))...)))))))))).)..))))))))))).).)).))))))).)))))))..))))))).)).)))))))))..))))....)))))))).)))....))

Thermodynamic Ensemble Prediction

((...(((....))).))((...(((((((((((.......))))))),..))))..((((((,,((({{(((({{(((,,((((,((.((((((....({{(((((((,{(({...,,({.({{{.{{.{..|||{((.(((((,...,))))).))..,,,,,{,,{{((((((({(,..,{|{,|||,|||....,},))}.)}))}}}}}}}}}||,|}}}}}.|}.}}}}}||||||||,||}}|,,|}}}}}...........)),}...}},|||||,||{||.,,|||||||.....,|,,,||||||{|,.|||||||||||{|{||..}))))).}})))))}.})),},,})}))))))),}),)))))}}..,)))))).}))))}..))