Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr3_0116700

Sequence Length

330 nt

GC Content

0.5121

UGCGUGCAGAAGCUUUAUGUAGCAGAGUGGGAUACAGUCAAACAAAAAUGAGGUUGCCAUGGCAACAGGCUCCAGCAUCAUUGCAGCCUAUUAACACAAGUGAGGAAUGUGUUUGGCAGAUGCUCCAGUGUUAUUUAUGGUAUGGGUGUAGCAGAGGGACUUCUAACAGGCAAAGGAGGAGAAAAAAACAACCCCGUGACGCUCCUACUAUACCCCAGCGAGGAGACAGGAGUCGACAGUGAGACAAGAGCACAGCAGAGGCUGAGAGGCCUCGAACAGGGAGGGAGAGAUGGGAAAGCAGAGCCUGCAGGAAGGCAGCAGAGAGGUGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-78.70 kcal/mol

Ensemble Metrics

Free Energy: -85.34

Frequency: 0.0000

Diversity: 96.02

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((........))(((((.(..(.((.((.....)).)).............((((((....(..(((((((...((((.((.(..(((...((((((.........))))))..((.(.(((((..((.((((((((((((.((((((.((.(.(((.(((((..........)))))............)))))).)))))).))))))).........(..(((....)))..)))))).))..)))))).)).((((((....)))))).....)))..).)).))))........)))))))..)...)))))).)..).)))))

Thermodynamic Ensemble Prediction

,{(.{{{{...||({{,{,{,,|.((.((.....)).)).............((((({...,|,,|((((((..,((((.((.(..(((...((((((.........)))))}..((.{.(((((..((.(((({{{({(({.((((((,({,{.(((.(((((..........}}})},,..........)))}}).}))))),)}))))),||..,,..|,.(((....)))..}})))).))..)))))}.)).((((((....)))))).....}}}.,).}}.)))),....,,.))))))),,,,..}}||}|....,,,)),.