Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr3_0290400

Sequence Length

232 nt

GC Content

0.3836

GUUUUCAUAUCUUUGUUGUUUCCAGAAUACCCUUGGGCUCUGUACAAUGCAUAUAAACAGCUCUUAAACUGUGGUGAGGCAUGACACAAACACCUCUGUAUGCUACAGACUCACUCUCCAGAAAACUGUACACGUGAAAUUACAUAACAUUUCAGGGCUUUUGAAUAUCCUCAAAACUCAAAUAUAGACUCCUCAUGGGUUUGGUGGACUUUGUAAGAAUCCCAAUUUUAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-40.30 kcal/mol

Ensemble Metrics

Free Energy: -43.86

Frequency: 0.0031

Diversity: 43.80

Structure Visualization

Structure Prediction

MFE Structure Prediction

(..(((.(((....(((....((((...((((.((((.((((((....(((((((.((((........))))((((.(........)...))))..)))))))(((((..((........))...)))))....((((((........))))))(((.((((((......)))))))))...))))))...)))).))))))))..)))...))).)))..)(........)

Thermodynamic Ensemble Prediction

(..(((.(({....(((....((((...((((.((((.((((((....(({{{{{.((((........)))){{{(,({..,........,,}}||}))))))|||||..{{......,,|,...)))},..,.((((((........)))))){|(.((((((......))))))}}}...))))))..,)})).))))))))..)))...))).)))..)(........)