Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr3_0478900

Sequence Length

428 nt

GC Content

0.2921

GUGAGAUCUUUAUUGACUUAUUGUAAUUUUUUGGCAUACAAAUUACUUAAGUAUAUUUACAAUUCUUACAUAAUGUACAUUUUAGAAGAUAAUGUACUUUGCUCCAUUUACAAUGACAAACUACUGUAAAACUACAUUCAUGAAUUAGAUACAAAUCCUCUACAUACUAAUAAAAAGUAAAUGGACUGUUGGUUAUACAUUCUUUAAAAUAUACCUUUUCACAGGUAGCAAGAAAUAGUACAUGUAAUAAGUCUUUAUGACUGGAAUGAUCCAGAAAUAUCACAAAGCAUGAGUAAACACAUAUAUAAAAGUAGCUCAUCAUUUCCAAAAGUUAACCUUUAGCCUUUGUGUAAAAUAAAUGGUGCCAACAAUCUUUAUAAUGUAGCAAGCUUUCCCUGUUUAAUAUCCAAAAAAUGGAGGGUGGGGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-65.10 kcal/mol

Ensemble Metrics

Free Energy: -76.27

Frequency: 0.0000

Diversity: 141.60

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((.....((..(((((..((((((...((.....)))))))).)))))..)).......)))))).....(((((((.........))))))).........((((((.((......)).)))))).(((((((.((((...((((........((((..((((.......))))..)))).(((((((..(((((.((........(((((......))))).........))...)))))....(.((((.((((((((....))))).....))).)))))((((((...................))))))........((((.....)))).((((((((.....))))).)))))))))))))))))))))))))......((((((((((....((((.....))))))))))))))

Thermodynamic Ensemble Prediction

(,((((.,,...,,{,(((({{((((,,,.((({{{,.,}}}}}||.}}}||,.,,.,,,...}}||||...,,(((((((,{.,,,{{.}}|||||,,,{,((({(((((,.,,.........||||...,||||,{.{{{,,.,{((,........||||..{,{{.......,)))}})))).,{{{|||..|||||||||}......(((((......)))))....,,....)}}}})}},...,|,{,,{.{||(((((....)))))...,.,||,{|||,((((((..,,............}}.))))))........{{,({{{...,))})},))))}).......,,,}))))))),),..,)))))))),))}}}}.}||||((.((({...((((.....))))...)))),))