Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr5_0543600

Sequence Length

442 nt

GC Content

0.4367

GUGAUAAACAUAGACUAACAGUUUGGAAAAGAGGGAAAUGGCAAAAUAUAAUUAAGAACGACCAACUGAACACAGAGAAAAUAAGGCUAGGUAAAUGAAGCUAACUAUAAAUAUAGGAAGCUAAGGGAAUCAGAAGAGAAAGCUGAAUAGCAGCUAAGUUUCUUUUUUACAAUUAGGAAACCUAAGAAGAGACAGCUAAAAAGUGAAUCUGAAAAAUGGGAGUUAGCAGUAGGCCGGGCUCAGUGGCUCACACCUGUAAUCCCAGCACUUCGGUAGGCCAAGGUGGGCAGAUCACCUGAGGUCGGGAGUUCGAGACCAGCCUGGCCAACAUGGCAAAACCUGUCUCUACUAAAAAUACAAAAAUUAGCUAGGCAUGAUGAUGUGCGCUUGUAAUCCCAGCUACUUGGGAGGCUGAAGCAGGAGAAUCGCUGGAACCCGGGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-100.00 kcal/mol

Ensemble Metrics

Free Energy: -109.25

Frequency: 0.0000

Diversity: 116.77

Structure Visualization

Structure Prediction

MFE Structure Prediction

....(((((...........))))).......(((...((((.......................(((....))).........(.((((.(((....((((..((((....))))..)))).........((((((((((((((.....)))))....))))))))).....((((...))))((.((((((((.......(((...(((((...(((((..(((..((.(((((.......))))).))..)))...)))))....)))))..(((((.(.(((...((.(.((((....)))).).))....))).).)))))..)))........)))))))).)).............))).)))).)..(((..(.(((....((..((((((....)))))).))....))).)...)))))))...))).....

Thermodynamic Ensemble Prediction

{{..,..,|.,,,,{,...|}}}}|,......,{,...{({,...................}},.{{{....}}}.........{,((((.({,....((((..((((....))))..)))).........{(((((((,(((((.....)))))...})))))))},....,((((...))))|{.((((((((.......,{,..,((,{,...{{|||.,|{{{.((.((((({{{,...|||||,,,..}}}...||||}...,|||||,.{(((.{((({(,,.,,,}}||||.}}}}))),,.,},,).))})))))))).,}.,,},.....)))))))).},.............})),)))}{|{{,....,))}}((((,,..((((({....}))))).,,..))))......,}}}|||,..,)),,..,