Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr5_0544100

Sequence Length

547 nt

GC Content

0.3803

UGAUUCUUAACUCUGGCGGCACAUGAGAAUCAUCUAUGCCCAGGCCAACACCCUUAACCAAUUAAAUUAGAAUCUCUAGAAGGUAGGACAUAGGCAUCAGUAUUUUCGCUCUGUUUCAUUGUUUGUUUUUGAGGUAAAGUUUACGUAUAGCGAAAUGCAGAGGUCUUAGGUGUACAACUCUCUUGGAGUAAUAAACACCCCAAUCAAGAUACAGGACAUUUCCACUACUCAGAAAGUACCCUCCUGCCCCACAUCCAGUCAAUGCCCCUACCAAGCAAUCACUCCUCAUAUUUCUAAUGCUAUAGCCUCAUUUCUGCACUUCAUAUAAACAUAAUCCAUCAUAUAGUGUGUACUCUUCUGUAUCAGACUUCUUUCACUAAACACAAUGUUUCAGAGAUUCAUUCAUAUACAUUUCAUCAUGAAAAAAGUAGUUCAUUCUUUUUGACUGCGGAGCAGUAUUCCAGCAUAUGAAUAUACUGCAAUUUGUUUAUCUGUUCUUUCUGCUGACUGACAGCAGAGCUGUUUUAAUUUGUGGACUAUUAAAGCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-98.40 kcal/mol

Ensemble Metrics

Free Energy: -110.66

Frequency: 0.0000

Diversity: 137.24

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((........)).(((((((.((((...))))...)))).(((.......)))...............((((((((.((((((((((...((((...((((((....((((((.......((((((....(.((((...)))).)..))))))..))))))(((((.(((((...(((((...))))).....)))))......))))).(((((..((((.........))))......)))))..........(((...(((.........)))...)))............))))))...))))...)))))).))))......................(((.(((((......))).)).))).........(((((...))))).))))))))...........(((((...)))))..((((((((((.......(((.((...(((((((..((.....))...)))))))...................(((((((.....))))))))).))).......))))))))))...)))

Thermodynamic Ensemble Prediction

,({........,.{(((((((.{{({...})))...))))...}}}}......,...............((((((((.((((((((((...((((...((((((....{{{((,..,,{({{{(({,...,{{{{{,.,,,|}},,,,})})}},,||||||({{{,.(((((...(((((...))))).....)))))......,,},,.,,(((....}}}..{,....,.,))},.,,)}})),.........,{{...||{........,))).,.},,............}))))),,.))))...)))))).))))......................(((,(({((......))).)).)}}.........|{(({...})))}.))))))))...........,{{{,..,)))),..{(((((((((.......(({.(({({(((({{{,,,{,,,.,|},,.}}}}))}....,},..,.,}}}},,.(((((((.....))))))))).))}..||...))))))))))..,}},