Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr5_0544200

Sequence Length

377 nt

GC Content

0.3156

AGAACUGACAAAAAAAAGUCAUCAAUAGUCAUACUUAGUAUUACAAAAUAAAGCUGGAAUUUCCUAAUGGAAAUAAGUCUAGAUGCUCUUUAUUAGACUCCCAACCCCCUCAAAAACAGCAUUUUCACUAACUUUAACUGCUAGCUAAUGUUAACUUACAAGUCCAUGGAUCAACCACAAAUUAAAAACUCCUGCUCUUAAUAAUUACAAUUAAUACAUAUACAUUGGCAAUACAGAUCUACAAUCUCUUAUCCAAACUCUUCAGGCCAGUAGAUGUGUUUCAGAAUUGAGAAUUUUUCAUUUUGGAAAAUACUGCUGCAGGGAAGUAUAAUUUACAAAUAUUAACUCUGAUGGGAAAACGAUAUAAAUAAACACCA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-49.60 kcal/mol

Ensemble Metrics

Free Energy: -57.74

Frequency: 0.0000

Diversity: 110.69

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((..((((........))))......((.((((...)))).)).......((((((.((((((....)))))).(((..(((((((.(((...((............))...))).)))))))..)))...........))))))..(((......)))......(((.....)))............((((((............(((((...((((((..((((((.....(((.....................)))....))))))..)))))).....)))))((.((((((((...)))))))).))...))))))..(((.....)))..........)))..(((....................)))

Thermodynamic Ensemble Prediction

.{,..((((........)))).,....{{.{{{{.,.||}|.},....,,.{(((((,((((((....)))))).(((||(({{{,,.{||.}}||,,,.........,|...,,,.||||}}}..,,,.........,}}}||||,,{{{,.....,.,||,...{((.....}},............|||||{..||,.,.......,,},,.,,,,,,,,||||||.....((({.....,}}}...........,,|....|}||||{{}|||}|((((((({{((({...})))))))))))).)),}}}}}))}})).,||,,,,,.,....,,}}},.,},},,|||}...................,,.