Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr6_0030100

Sequence Length

560 nt

GC Content

0.3661

GUGGAAAUGACCAAGUGUAUAAGUCAGGGCCCUAAACAGCAAUACUCCAUUUAUCUGGAGAUGGCAUGGUAACCUAAAUCAUCCAGAACACAGACCAGUACCUUCCACACUAUGCUGGUCCAGAUCAUCACCAUUCAGACUUUACAGACUAAAUUCCAACAUGCAGAGACAGUGUCUGUCUUGCUUGCCACUAUUUCCCCAGGUGCCCAUCUACAUAAAACACACUCAAAUGAAUAUGAGUAAAUGUACUCACAAUCCUAACCACCUCAGUCUUCUGAAAACCAGUUGAUUUGGAAAACACUGAUGGUUCAUGAUGAUAAAGUAAGUUCCAGACUUAGUUUAAGAAAGCAGUAUAAUUUAAUACAUUUUAGAAAAACUACUAUAAAAUGUCUACAAUAAAUAGGCUUAGACAUUUAUACAUGUUAAACAAAAAGAAAAAACUCCCUAUGGAAUGAAAGGCAAUAAAGGAACCCAAAGCCCAAGAUUAUUUUUUGCAUUCUAAUCAAUUAAUUAAUAGCCUUUCGGUAAUGACUGGUUGAGAAGGAGUACAACAACCCUUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-104.50 kcal/mol

Ensemble Metrics

Free Energy: -116.23

Frequency: 0.0000

Diversity: 159.74

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.......))((((((((((((((.(((((.....((((.((.(((((......))))))).)).)).........((((((..((((.((((((((((............)))))))((((((((......((((((......(((((.........((.(((.((((((...))))))))).)).............(((((..............(((.(((((........)))))...)))...............))))).))))))))))).......))))))))......)))...))))..))))))(((.((((((...)))))).))).....................((((((((............))))))))............))))).)))..)))))))...................(((((...(((((((...(((................)))(((((.....)))))))))))).(((((((.(((...(((....)))..))).)))))))...))))).........))))

Thermodynamic Ensemble Prediction

((.......))((((.((...{{{{.((((({{.....{{..,.(((((......))))),|{|,{{(({.......}|||||},{{.,...((((((((............)))))))).,{{{{,.,....,{{{{{.,....,{,,|.........((.((({((((((...))))))))).)).............|||{|,,,...............(((((........)))))...|{|||||....,,.,,,,|||||,||||||||||,...,,}.,}})))))},...,)))},})}}}..}})}}|(((.((((((...)))))).)))}....,,,.((({......}}}}.,,|||,....,|...{{{{{{{((((((.............)))))))))))}..,}}}.................(((....))}.,({{{(((......{{....,...|}}|,,{{,,...}}}}},.||||,.{,,,,,,.||,.,.|||}}}})}}..}}),)))))),,,.}))))}}}...}}.))))