Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr6_0550700

Sequence Length

360 nt

GC Content

0.4889

GUCCAUGUUCUUCCGGCUGGAGAGAGAUGGAGCUGUGUUCUUCCUGAACUUCUGGCUGGCAGCAAACAGCUGGCUGUUUUUGGAUUCGUGGUCUUUCCCAAUCACGAGUGCCUUAGGAGAGGUCUUAGAAAAGUUGCUGUUGGUGGAUCUGGAGAUUUGUUUCCUAGCAUUGUUGGGAGAGGUCCUGUUUGUUCUGGUCAAUGUGCUCUCCUUCUGCUUCUCCGUGUGGCGUCUGUUGAAGUCGUGGAUGUAUUCCUCACAGUUCACGAGGUGCUGUUCCGGCUCCCAAGUGUCGUCCUCGCUGUCAUAGCCUUUCCACCGAACCAAAUACUCUGUCUUCCCUUUUUUAUUUUUCCUUUU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-92.70 kcal/mol

Ensemble Metrics

Free Energy: -100.57

Frequency: 0.0000

Diversity: 111.15

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((.((.((((....)))).)).))))(((((.((((.....))))...)))))(.((((.....)))).).......(((((((((((........))))))))).)).(((((((((...((((....(((...((((((((...(((((..........((((.....((((((((.((.(......).)).)......)))))))..)))))))))(((.((((.(..(((.(((((.(((((((..((((.........))))))).)))))))))..)))..).)).)).)))............))))))))..)))....)))).....)))))))))...........

Thermodynamic Ensemble Prediction

.{((((.((,((((....)))},)),))))|{{{,.((((.....))))..,{||||(,{{{{...,,))))}},},,...({(((((((((........))))))))).)}.,((((((((...{(((...,({{..,((((((((..,(((((..........((((..,..(((((((,.{{.,......,.}}.},,....)))))))..)))))))))|.{.((((.(..{((,{{(((,((({{{...{{{{.,..,,},.))))}}},},,}}||||..}}|,,|.}},},.)|||,....))),..)))))))),.}}}....)))).,,..)))}}}}}}...........