Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr7_0099400

Sequence Length

250 nt

GC Content

0.2680

AGAUAUACUCCUUUCUUGAUGUCUUUUGAGAUCUGUGGAUUAGUCAUACUAAACAAAAUAGUAAGUUACUGAAUUUAGUUUCUUGUGUAUUUAUAACCUCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAUGUGCAUCAAUGUAAUCAUAGCAGUAUGGCAGAGGAAAGAGAAGUUUGACAGAACUGGAUUUGCUUGACUCUACAACUUACUAAACUGCAUAAUCCUGA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-27.30 kcal/mol

Ensemble Metrics

Free Energy: -32.03

Frequency: 0.0005

Diversity: 58.39

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((.(.........)))))))((.(.(((.(((((.(((((((((((.....(((((.((((..((((....))))..))))..))))).............................................................((((....))))........))))))))((((..(((((((((((....)))))...))).)))..)))).........))).)))))..)))).))

Thermodynamic Ensemble Prediction

((((((.{.........}))))))((.(.(((.(((((.((((({{{{{{,....,,{((,((((..((((....})))..)}}},,}}}}}...........................................................,,{(({....||}}..|||.,.}}))))|,((((..(((.,{(((((....)))))...})).)))..)))).......})))}.)))))..)))).))