Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr7_0100200

Sequence Length

345 nt

GC Content

0.4696

AGAGUUUCCUGUUUUUCCACUCCUGAUGCUAAUCCUGAAGCUCUGGAACAAAGGAUAUUACCAAACGAUGGCCAUCGAUGUCAUGUGGCAGCCCUGGCAAGGCUCCCUUCCCAUUCGUGUCCUUUCCUUCUUGAGUUGCCAGAGAUUGCCUGGCUGCUGCCAUCCUGCACAUUUCACCAGAACAGCCCUCGAUCCUGAGCUUCUGACUCUUAAGCAAGCAACAUCUUUGAGAUUUUCUAGAUUUGUGCUGCCAAAAACAAGGGGCCACACAAGGGUAAACACAUACAGAAGUGACACUGUUACAGUUAGGAGAAGUCUCAAAGCUUUUCCUGAAACAUGGAGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-84.50 kcal/mol

Ensemble Metrics

Free Energy: -91.13

Frequency: 0.0000

Diversity: 137.43

Structure Visualization

Structure Prediction

MFE Structure Prediction

....(((((((((..(((..(((.((.(((........))))).))).....)))..(((((......(((((...((((....(((((((((..(((((..(((.......(((((..............))))).....))).))))).)))))))))))))..(((((..((...((((.....(((((...((.((((((........)).))))..))...)))))...)))).))..)))))..((........)))))))......)))))............(((((...)))))..(((((((((((......))))))))))))))).)))))..

Thermodynamic Ensemble Prediction

{,..,,,,||,{(({{(({,({(,((,({{.,,{,,,.|||||.|||....,{{,,.,..||...,{,{{((,,,,{,(({,,.{(({{{(({,{((,{({{{,,}||,.,,|,,,|,|..,,,.....,.,)))},|,|||.||}}}}},|||,|}})))},..,|||||.,{{...{||,.,||}{{||,,,,||.|||||{,.......,|{|||{,.{{,,{|||||...,))}}))..)))))}}|,.......,)))))),....}}))),..,.},,.}},..|||{{..,}}}}}..{((((((((((......))))))))))),,},,))))),,