Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr8_0416800

Sequence Length

472 nt

GC Content

0.3792

GCGUCUGGCACCUGCAAAAUGAAGUCUGUUCUCAAAUCCCCUAUGUCUACCAGUCCCCUUUCCUCCCUGUGAGAAUACACAAAUCCUCUAUUUAAAAACCCUGUCAAAGGUUUUGGACAUUAAUUAUUUUUCCUUUUACUUAUUUCUUGUACCUAAGUGUCAUUACCCAGUAAAUAGCCCAUUGCAGGGCAAAAGUCUUUAACUUUCCAAAGUGAAAUUGGAAUCACAAAUCCUUGAUUAAAUUCAUUACAUCAUCUUACCUCAUGUUACUAGACAGCAAAUUCAUCUCUAAUUCCAUCUUUGGCUCUGAAGCUAAGUAGGAGGAUUUAGUGAAAUGCCUAUGUGUUAAAGGAAAUUUCAUUUCUAAGAGAGGUAUUCCCAGGUGACAGAACAACCAGACUUUAUGAUAAGACAAGCUCAACCCCAGGACCUUUCACAGGGAUGAAUAACUUCUAGAAAAGCUAACACUGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-83.50 kcal/mol

Ensemble Metrics

Free Energy: -93.13

Frequency: 0.0000

Diversity: 135.68

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.((((((....)).....(((((.(((((....................................((((......)))).................((((((.(((((((((((..................((((((.......(((((....))).))......))))))..((((......)))).(((((((......((((((.......))))))...........(((......))).....((((((((((((.((((....))))(((..((((...((((.(((.(((((((((....))))))..))).))).)))))))).)))............((((((...))))))....)))))).....))))))..........)))))))....................))))))))))).))))))..))))))))))))))...))(........)

Thermodynamic Ensemble Prediction

({{{{{(({....|,.....{,,{{.{{{{{{{{..........,,,...|||......,.......{{||}},,,,,}},.......,,,,,,....((((((.(((((((((((..................,{((((.......{{{{{....)}}.}}......})))),..((((......)))).(((((((......{{{,,,,{{{,,.||}}||{{{........|||},...,))},,...{(((((((((((.{{{(....}}}}{{{..,{{{,..((((.(((.(((((((((....))))))..})),))).))))}))|,}}},,..,},,,..,(((({{...}))))}....)))))).....)))))}..........})))))}..,....,......,,....))))))))))).)))))).,))},,.,},}}}},...,}|......}})