Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr9_0336900

Sequence Length

516 nt

GC Content

0.3566

GUUCUACUCAAUCUAAUUCCUAAAAAAAUCACUCUUCUAUUCACACUAUCAUCAAUUAAUCCAGGUCACCUCUAAUAAUCCCUAGAACCAAUGUGACAACUUCCUAAUUAGUAGAUCCAUGCUUCAAUGUCUCCAGUGCAAUCUCUGUAUGGAAGCCAAGGAGAUUCUUCUUUUUAACAUUUCAAAGAGUGACUUUUCAAAAAAUGCAAAUCUGAUCCUAUUACCUAAUGAAAUAUCCUUUACAGGCUUCCAAUUACUCUUAGGAUAAAAACUGAAACCAGCACUAAUCCUAAAAGAUCCUGCAUAACCUGGUUAAUGCCACCAUUUCAAACAUGGUUUUCUCUGCAGCCUUUCUUUCUUUGAUGCUGUGGUCCUGACUGCCAUCCCUUUUAGAUACUAAUUAGUAGAGAAAAGCUUAAAUAAAAUAGAAAUAAAUUAUUCUCCACAAGUUAUAAUGAAAGGCUUUCUUUCCUUCUAGUGGAUCCAGGCAAUGAUCAGCAAAGGCUGCUAGACCAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-85.20 kcal/mol

Ensemble Metrics

Free Energy: -94.92

Frequency: 0.0000

Diversity: 133.37

Structure Visualization

Structure Prediction

MFE Structure Prediction

((...))(...((((.......................................(((((.((((((....((((........))))....(((.(((.(((........))).).)))))((......)).....(((((((((..((((((((((((((((((....)))))))...((((((.((.((((....(((.............))).....))))))..))))))..........))))))))..)))..(((((((.....(((....))).....))))))).))))..))))).)))))))))))...(((((.......))))).......(((((((((((.((.(((...(((.(((((..((((.....(((((((.....(((((.((.(((((...........................))))).)).)))))...))))))).............)))))))))))).))).))..)).)))))))))))))...)

Thermodynamic Ensemble Prediction

{{...,,,..............................................{((({.{{((((,,,.((((........))))......|}|||.,{{........||}{|,,.||||,.....}},.....(((((,{{{,,|{{{((((((((((((((....))))}}}...,,{{{{.|{|{{({..,,{{{.............}}}.....}},},,..})))},.,,,},....)))))))}..,}}..(((((((.....(((....))).....))))))).)))}..))))).}}}}})|}}}},,,{((({.......))))}....,,.((((((((({{.{{.,{{.{{(((.(((((..,{{{.....(((((((..,,.(((({.({.(((((,{,.,,..............,,..,,.))))).}).})))).,.}}}}}))....,,,,,....}})})))))}})})),.))..)).))))))))),)))...,