Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr9_0599600

Sequence Length

603 nt

GC Content

0.3317

GUUGAUAUACUGACAAAGAAGAGUACUAGAACUGUUGAUCAGAGAGGGAGCCGAUCCUGCAGUCACACAAAGUGUUUUUCCACUAAGACUCAGUAAGUCAGUUUGGUUUUGUAUUUCUAAAAAUAACAACAACAAUUCUUUCAGGGUUAACGAACAAAUUCAAAACUGAAGUCAUUCAAUUUUUCCUAUUUAACUAUCAUGUAUCUUUUUACGAUAAUGCUUUCCACUUAAUUUCUGUUUAUCAAGAGACAUUGCCUUUUCUAUAAAACCAGCCUUUAAUGACAUGUAAUGGUAGGAAAUCUCAAUGUUGCAAAACAAACAUCAUAAUAUUCAUAAUCUGAAAUAUAGGGCUAAUUGUUUUCUCUAUUUUAGUAUUUUCUCUGUAUAAUACAGCUCCUCUUAAAAUUUCCUCCUAUAUCAGAAUCUCAAGCUUCACCAUGAAAAACUUACAUUAAAAAGUGCUAAUUACAGUCAGAAGAUGUUAUUUGACUCAGGAGCAGAUGUGAAAAAAAGCAUGAUACACAGAACAUAUGCAGUGUAAUUUCAUUUAGAGAACAUUAAACGUUGCUUGGGGAUGCAUGCGCAGGCAGAUGACUGGUAAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-96.70 kcal/mol

Ensemble Metrics

Free Energy: -109.22

Frequency: 0.0000

Diversity: 231.01

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((.((.((((...((((((.(((((((((((.....)))(((((((((.(((.(((.((((......((((......))))..)))))))...)))...(((((((((((((((................((((((...))))))...(((....((((....))))....)))....((((((((.....((((..(((......)))))))...............(((((........)))))((((((....((..((((.......))))..))...)))))))))))))).....(((((........))))).................)))))))))))))))..))))))))).))))))))))))))(((((...)))))........................)))).)).)))).(...((((........(((((((......((((..(...(((((((........))))))).)..)))))))))))......(((((............)))))(((((..((((.....)))))))))...(((((((((.(........).)))))).)))..))))...)

Thermodynamic Ensemble Prediction

((((,,{{,(({{,..,{{{{((({{{,{{|{(({,,,{|}|{({(((({{.{{|,{{{,{{{{,.....{(((......)))}..||||}}}...))).|,{((((((((((((({....,,,..,,......,,,||,,,||}}}}...{{{....|||{...,})}|....}}}....|{{{{{{{.....{{{(((((,,.,,,,||||||,.{{{,.,..........,{({,{{,,..|||||{{{{{...|||{,,|,,,..,|,..,}},.,}},,,}},,}})))))))}.....{((((........))))}..............,,{||||||||||||}||..}}}}}}}}},})))))}}}},,,,{((({...)))))...........,,,,,,,}},,},}}}}.,,.||||,{,{{,.,,||,.....{({{{{{....,,||{{..,...(((((((........))))))).,,,))))}}))))),,....})})},||,,,.,......,,},||||,.{{{(.....)))},}}},....|{{(({{{.{......,.).))))))}})}.})))},,,)