Forensic RNA Knowledge Base

Sequence Details

Symbol

NM_002100.6

Sequence Length

564 nt

GC Content

0.4184

AACAGCUAGUAGGCUAAGGCCAGACACUGACACUUGCAGUUGUCUUUGGUAGUUUUUUUGCACUAACUUCAGGAACCAGCUCAUGAUCUCAGGAUGUAUGGAAAAAUAAUCUUUGUAUUACUAUUGUCAGAAAUUGUGAGCAUAUCAGCAUUAAGUACCACUGAGGUGGCAAUGCACACUUCAACCUCUUCUUCAGUCACAAAGAGUUACAUCUCAUCACAGACAAAUGGAGAAACGGGACAACUUGUCCAUCGUUUCACUGUACCAGCUCCUGUAGUGAUAAUACUCAUUAUUUUGUGUGUGAUGGCUGGUAUUAUUGGAACGAUCCUCUUAAUUUCUUACAGUAUUCGCCGACUGAUAAAGGCAUGAGGAUGUGGCCUGCAUGCUGCCUGAUCUUGCCUAGAACCGGCUGCACCUGCUGUUCUCUUGUUUAUGCAAACUGGCUGCACCUGCUAUUCCUUUGCUUAUGCCCCUACCCCUGGCUAUCCUAAUUCCCUGUUCUCCUGCCUCACUAUUACUGUAUUCUCUACUUCUAAAUAAAAAUAAAACAAAAUACAAACCGUU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-135.10 kcal/mol

Ensemble Metrics

Free Energy: -145.48

Frequency: 0.0000

Diversity: 182.07

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((.((((((....((((.((((((((.(....)))).)))))...((((((..((((((..(((.(((((.....(((((((((.((..((((.((((.((.((((...)))).)).)))))))).)).)))))))))....((((((..((..(((((((((((((...)).))))))).....((((((((((.....(((......)))......)))...)))))))...(((((...)))))..(((((((..(((((((((...(((((((......)))))))............)))))))))...)))))))((((((....(((..(.((((........)))))..)))....)))))))))).))..)))))))))))........(((((.(((.......))))))))...)))..))))))..))))))....((.........))....(((.........)))......................))))..))))))))))...........................................

Thermodynamic Ensemble Prediction

.((((.((((((({..{(({,((((((((.{....}))),})))}.,{(({((,..,,{|||,,||,..,{(({....(((((((((.((..((({.((((.,,.{{{,...,}}).}}.)}}}|})}.)}.}))))))))....{{{({...{{{,{{{,(((((((((...)).)))))))..,,,(({,{{{{{{...,,|||......}}|{{{{{{,||{,,,||}|||{{{(((({...}))))..||||||,,{({,,{{{{{...(((((((......))))))),,})}.}))}}}))})))))),..}}|}}}}||,|||...,|}|}|,,||||,...,,,,})))...,}||{{,|||||,||||,,,{{||||,||{.|.,,{.,,..|||{|,|||.,,....))}))))}...}}}..,)))),..)))})),...||.,..,,...}),,,,|||........,)))..............}....,,,)))).}))),,,))))...........................................