Forensic RNA Knowledge Base

Sequence Details

Symbol

NM_005001.5

Sequence Length

580 nt

GC Content

0.5517

AGUAUCGCGGACGGAAGAUGGCGUCCGCCACCCGUCUCAUCCAGCGGCUGCGGAACUGGGCGUCCGGGCAUGACCUGCAGGGGAAGCUGCAGCUACGCUACCAGGAGAUCUCCAAGCGAACUCAGCCUCCUCCCAAGCUCCCUGUGGGUCCUAGCCACAAGCUCUCCAACAAUUACUAUUGCACUCGCGAUGGCCGCCGGGAAUCUGUGCCCCCUUCCAUCAUCAUGUCGUCGCAGAAGGCGCUGGUGUCAGGCAAGCCAGCAGAGAGCUCUGCUGUAGCUGCCACUGAGAAGAAGGCGGUGACUCCAGCUCCUCCCAUAAAGAGGUGGGAGCUGUCCUCGGACCAGCCUUACCUGUGACACUGCACCCUCACGGCCACCCGACUACUUUGCCUCCUUGGAUUUCCUCCAGGGAGAAUGUGACCUAAUUUAUGACAAAUACGUAGAGCUCAGGUAUCACUUCUAGUUUUACUUUAAAAAAUAAAAAAAUAGAGACAGAGUCUCACCAUGUUUCCCAGGCUGAUCUUGAACUCCUGGCCUCAAGCGAUCCUCCUGCCUUGACCUCCCAAAGUGCUGGGAUU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-193.30 kcal/mol

Ensemble Metrics

Free Energy: -203.67

Frequency: 0.0000

Diversity: 190.71

Structure Visualization

Structure Prediction

MFE Structure Prediction

......(((((((........)))))))((.((((........)))).)).((((..((((((((.(((..(((((((((((((.((((.((.(.((((....(((....))).))))).)))))).))..........)))))))))))..(((.....)))............(((((((....)))))))..))).))).....)))))..))))........((((..((((.(((((((((.((((((((((.((((...(((((((((.((.((((((.((....))..)))))).))..((((((((.((.......)).))))))))...((((....(((......(((......)))......)))...)))).........(((((((((.....)))))))))..(((.............))).....)))))))))(((((..(((...)))..))))).................(((((...)))))..............))))..))))....)))))).)).))))..))).))))..)))).(((((......)))))..

Thermodynamic Ensemble Prediction

......(((((((,....,.,|}}}})).,.||||,...,{{{((||{{,,{{,...(((,(((.{((({.((,((((((,,,..,|||}||...((((.{{{((({...|,|,||,}..,|||||{|.......{{{{.,,|||||,},...,))}}}})))......,,,...,,||||{...,|}|}|||,{{,,(((,....{{{|,,.....|.......,{,.((((((({{((,(({((,((({(((,,(((((((((....)))))))..)))))).{{.....,,,||||||}}}.,||||{{(({((,,.....}),)))))}}|{{.,..}))}.)))))..}}}))))}},))})),},.|||}},.})),.........(((((((((.....)))))))))..,||||,....,,,{|,........((((((((.(({....,,,},,)))))))).........,.........(((((,..|}}}}.,..}}}}}}..})))))}.}}}),.))))))).....})))....}},))))}.))),||||,.}}}}})))),..