Forensic RNA Knowledge Base

Sequence Details

Symbol

NM_005947.3

Sequence Length

393 nt

GC Content

0.5038

AUCACACCUUCCUCCUGCCCUGACUUCUCAUAUCUUGCCUAGGAACUCCAGGCUUGUCUUGGCUCCAAAUGGAUCCCAACUGCUCCUGCACCACAGGUGGCUCCUGUGCCUGCGCCGGCUCCUGCAAGUGCAAAGAGUGCAAAUGUACCUCCUGCAAGAAGUGCUGCUGCUCUUGCUGCCCCGUGGGCUGUGCCAAGUGUGCCCAGGGCUGUGUCUGCAAAGGCUCAUCAGAGAAGUGCCGCUGCUGUGCCUGAUGUUGGGAGAGCCCUGCUCCCAGACAUAAAUAGAGCAACCAGUACUAACCUGGAUUUUUUUUUUUAACUACCCUGACCGGUUUGCUACAUUCUUUUUUCUAUUCAAUAUGUGAAAGACAAUAAAACACUUUUGACUUGA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-108.80 kcal/mol

Ensemble Metrics

Free Energy: -115.23

Frequency: 0.0000

Diversity: 113.98

Structure Visualization

Structure Prediction

MFE Structure Prediction

....................((.(((.((((((.(((..((((((.(((((((((((.((((.(((....)))..)))).(((....))).((((((.....))))))..(((((..((....))..))))).((.((((....))))))...))))).(((((((.((((((....((((..(((((............)))))))))((((((((((.((((.((.(((.(......).))).)).))))..))).(((((.......))))))))))))...))))))..)))))))..))))))...............(((......)))..............))))))..))).))))))))).))....................

Thermodynamic Ensemble Prediction

.,{,,...........{,..,{,{{{.{(,,,,.,,({{(,((,..,||||||,,|,.{(((.(((....)))..)}},.(((....))).((((((.....))))))..(((((..((....))..))))).,({((((....)))},)}..|||||,{({{{{{.,|||||}||.((((..{((((...,,...,...))))))))){{{((({,,,.||||.{{.{{{,|,,,,..}.)||,|},}}}}.{||{{(((((.......)))))))))))...,)})))).,|||}}},..})))),...............{{{......)))..,...........,,}}}}..,,,.,)))))|||.||,..........,}}..,,..